Pisum Genetics
2007—Volume 39
Genomic Resources
List of genes postulated to be on pea LG III between Fed 1 and just distal to Egl 1
Assembled by Weeden, N.F. and Moffett, M.D. Montana State Univ., Bozeman, MT, U.S.A.
The table below presents the predicted order of genes and many pseudogenes on the upper 2/3rds of pea LG III
based on Build 1 of Medicago truncatula chromosome 3 (www.medicago.org/genome/downloads/Mt1/), the known
order of genes on pea LG III and the high degree of conserved synteny known to exist between pea LG III and M.
truncatula
chromosome 3. Gaps between contigs in the M. truncatula build are usually designated by wide, shaded
horizontal bars (some rearranging and combining of contigs is presented in this table as a result of apparent
differences between the pea and M. truncatula chomosome maps and additional BLAST analysis of contig ends by
the authors). The polarity of the gene sequence within a contig is usually not known relative to the polarity of the
pea linkage group and, thus, has generally not been changed from that given in the M. truncatula build. Narrower,
unshaded horizontal gaps in the table indicate breaks within the contig. The first column provides the gene symbol
or Genbank accession for the pea ortholog of the M. truncatula gene listed in the third column. The second column
provides the approximate distance from the top of pea LG III of the pea gene based on data generated from the
JI1794 x Slow population used to develop the consensus map for pea (http://hermes.bionet.nsc.ru/pg/38). Genes
listed in bold in the third column have appropriate properties (relatively large size, relatively low copy number,
presence of introns) for use as intron-targeted sequence tagged sites. Those genes in bold and underlined are
particularly suitable for this purpose or have been used as STS markers. Build 2 of the M. truncatula genome has
been released (www.medicago.org/genome/downloads/Mt2/); however, the changes suggested by information
presented in the new build are relatively minor and have not been incorporated into the table. A list of the
abbreviations used in the table is provided at the end.

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

Fed1

0

 

 

 

Lectin-like receptor kinase

 

 

Hexose transporter

 

 

Myosin heavy chain-like

 

 

Isoflavone reductase like protein

 

 

 

 

 

Xyloglucan galactosyltransferase

 

 

Cyclin-like F box

 

 

Cyclin-like F-box

 

 

Cellulose synthase

 

 

Dimethyladenosine transferase

 

 

PK

 

 

MYST-type acetyl transferase

 

 

60S Ribosomal protein L11 (L5)

 

 

Receptor-like kinase

 

 

PK, EGF-like

 

 

ZFP

 

 

PK, EGF-like

 

 

Tetrahydrofolate DH/cyclohydrolase

AB218759

 

Cytochrome P450

 

 

Prefoldin

 

 

Aminophospholipid ATPase

 

 

 

X54844

 ---

Beta tubulin

 

 

TF E2F/dimerisation partner

Rb, AGLP

6

 

 

 

 

HMG-I and HMG-Y, DNA-binding

 

 

Cytochrome P450

 

 

 

 

 

Kelch-repeat containing F-box protein--Saposin B

 

 

Protein phosphatase 2C

 

 

Ionotropic glutamate receptor

M55147

9

cpGlyceraldehyde-3-phosphate DH

 

 

Mlo-related protein

 

 

ZFP, DHHC-type

 

 

Peptidylprolyl isomerase, FKBP-type

 

 

Ribophorin I family

 

 

General hexose transporter

 

 

Peptidase C1A (CysPr1)

 

 

General substrate transporter

 

 

Phosphatidylinositol 4-kinase, putative

 

 

BURP containing protein

 

 

PK

 

 

Adaptin, noncathrin coat protein

 

 

 

 

 

Histone deacetylase superfamily

 

 

Sugar transporter superfamily; major facilitator superfamily MFS_1

 

 

GT, family 13

 

 

Glycoside hydrolase; chitin-binding (chitinase)

 

_____________________________________________________________________________________________________
45

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Phosphoesterase, DHHA1

 

 

 

 

 

Glutamyl tRNA-reductase

 

 

Phosphoenolpyruvate carboxykinase

 

 

Beta-1,3-glucuronosyltransferase

 

 

 

 

 

S25 ribosomal protein

 

 

S-adenosyl-L methionine:salicylic acid carboxyl methyltransferase

AJ491794

 ---

Bifunctional dihydrofolate reductase/thymidylate synthase

 

 

Phosphatidylinositol transfer-like protein III

 

 

Phosphatidylinositol transfer-like protein II

 

 

Terpene synthase-like

 

 

H+-transporting two-sector ATPase, delta/epsilon subunit

 

 

Inositol monophosphatase; Histidinol-phosphate phosphatase

 

 

Kinesin-like protein

 

 

Ethylene-forming dioxygenase

 

 

Endo-1,4-beta gluconase

 

 

Dihydrouridine synthase ZFP

 

 

Purine/pyrimidine phosphoribosyl transferase

 

 

Auxin responsive SAUR protein

 

 

Calcium-binding EF-hand

 

 

Carbohydrate-binding Phytochelatin synthetase-putative

 

 

Purine nucleosidase, family 1

 

 

GT

 

 

Translocon-associated protein alpha subunit precursor

 

 

Peptidyl-prolyl cis-trans isomerase, cyclophilin type

 

 

Galactose-binding like Glycoside hydrolase, family 10

 

 

Beta galactosidase-like

 

 

Protein transporter

 

 

Glutamate 1 semialdehyde aminotransferase

 

 

ATP-dependent helicase

 

 

 

 

 

Acetylglutamate kinase

 

 

Cyclic nucleotide-binding; cation channel

 

 

Protein of unknown function DUF581

 

 

60S Ribosomal protein L10

 

 

Protein prenyltransferase-like

 

 

 

 TubA

18

Alpha tubulin

 

 

Carbohydrate kinase, FGGY

 

 

Sodium/hydrogen exchanger

 

 

Protein of unknown function DUF676

 

 

Amino acid permease AAP6

 

 

KH, type 1

 

 

Protein of unknown function DUF676

 

 

Thiolase

 

 

TPR repeat

 

 

PK

 

 

Pyrophosphate-dependent phosphofructokinase

 

 

Early nodulin 93

 

 

Prefoldin; frigida-like

 

 

Arginyl-tRNA synthetase, class Ic

 

 

PAP/25A core; Poly(A) polymerase, RNA-binding  region

 

 

Receptor kinase LRR

 

 

Amino acid permease AAP6

 

 

 

 

 

Glycoside hydrolase, family 17; X8

 

 

Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2

 

 

Protein of unknown function DUF239, plant

 

 

Plasma membrane H+ ATPase

 

 

ZFP, RING-type

 

 

Galactose oxidase, central Cyclin-like F-box

 

 

DNA-binding WRKY

 

 

ZFP, RING-type

 

 

FAD dependent oxidoreductase

 

 

FAD dependent oxidoreductase

 

 

RNA-binding region RNP-1

 

 

Ion transport protein

 

 

GT, family 2

 

 

UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter

 

 

RNA-binding region RNP-1

 

 

PK

 

 

PDI-like protein

 

 

Auxin responsive SAUR protein

 

 

26S proteasome subunit

 

 

Calcium-binding EF-hand

 

 

No apical meristem protein

 

 

PK

 

 

Dehydrin-responsive protein, BURP

 

 

FAD-dependent pyridine nucleotide-disulphide oxidoreductase

 

 

GTP-binding protein, HSR1-related

 

 

Beta-Adaptin subunit, related

 

 

 

Rms1

20

Carotenoid oxygenase

 

 

Protein of unknown function DUF810

 

 

Regulator of chromosome condensation, RCC1

 

 

ZFP, PHD

 

 

ZFP, GATA type

 

 

Unknown protein

 

 

ZFP, GATA type

 

 

Homeobox TF

 

 

LRR transmembrane protein

____________________________________________________________________________________________________
46

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Unknown protein

 

 

Lysophospholipase-like protein

 

 

 

Y14558

 

Topoisomerase I, beta

 

 

Subtilisin-like protein

 

 

At diphthine synthase, putative

Y14558

 

Topoisomerase I, beta

 

 

Protease inhibitor I4, serpin

 

 

Topoisomerase I, beta

 

 

Peptidase, subtilase

 

 

Peptidase, subtilase

 

 

Protein of unknown function DUF677

 

 

Proteasome component region PCI

 

 

H+ transporting ATPase

 

 

Pseudouridine synthase RluD

 

 

tRNA synthetase, class II, Prolyl-tRNA

 

 

2OG-Fe(II) oxygenase

 

 

AAA ATPase

 

 

Peptidase S8 and S53, subtilisin

 

 

Seringolide-induced protein 14-1-1

 

 

SAM sterol C MT

 

 

Phospholipase D, beta 1

X16082

 ---

Plastocyanin

 

 

Ornithine decarboxylase

 

 

 

 

 

Cyclin like F box, Grr1 protein

 

 

Phospholipase D

 

 

Phospholipase D

 

 

Pathogenesis-related transcriptional factor and ERF

 

 

IDS-4-like protein, putative

 

 

Helicase

 

 

Protein of unknown function DUF250

 

 

Expansin 45, endoglucanase-like

 

 

Adenine nucleotide translocator 1 (brittle 1)

 

 

Cellulose synthase; ZFP

 

 

Calcium-binding EF-hand; Homeodomain-related

 

 

ZFP, TTF-type

 

 

ZFP, RanBP2-type

 

 

Phospholipase/Carboxylesterase

 

 

Peptidyl-prolyl cis-trans isomerase, cyclophilin type

 

 

Agenet, RNA binding

 

 

GTP binding nuclear protein Ran2

 

 

Ras small GTPase, Rab type

 

 

Cyclic nucleotide-binding; Ion transport protein

 

 

HCO3-transporter, boron transporter

 

 

Deoxyxylulose-5-phosphate synthase 

 

 

 

 

 

WD-40 repeat; quinonprotein

 

 

SWIRM; amine oxidase; NAD-binding site

 

 

PK LRR

 

 

Protein of unknown function DUF726

 

 

ZFP, CONSTANS-type

 

 

Forkhead-associated; SMAD/FHA

 

 

Transcription factor, MADS-box

 

 

 

 

 

AUX/IAA protein

 

 

H+-transporting two-sector ATPase, B/B subunit

 

 

Phox-like

 

 

Plant lipid transfer/trypsin-alpha amylase inhibitor

 

 

TRAF-like MATH

 

 

Exostosin-like

 

 

C2 calcium/lipid-binding region,

 

 

Proteinase inhibitor I3

 

 

Proteinase inhibitor I3

 

 

Cysteinyl-tRNA synthetase, class Ia

 

 

Nodulin-like

 

 

Nodulin

 

 

Knotted-like KNAT3; KNOX1; KNOX2

 

 

DNA-binding region

 

 

Response regulator 12 (ARR12)

 

 

Chromosome remodeling factor, TF

 

 

Chaperonin clpA/B AAA ATPase, central region

 

 

ZFP SWIM-type

 

 

Stromal cell derived factor

 

 

Chromogranin/secretogranin

 

 

von Willebrand factor, type A, Tudor

 

 

TAF5-like RNA polymerase

 

 

WD40 associated region in TFIID subunit

 

 

DNA-binding WRKY

 

 

WRKY

 

 

Nuclear RNA polymerase IV beta subunit

 

 

Nonaspanin, transporter

 

 

Copper ion binding domain

 

 

Proton gradient regulation 3/PRR

 

 

U6 small nuclear RNA

 

 

Protein phosphatase 2C-like

 

 

Cytochrome b5

AJ000520

 

Rieske [2Fe-2S] protein Tic55

 

 

Lariat debranching enzyme

 

 

Peroxidase

 

 

ABC1 family protein

 

 

Protein phosphatase 2C

AY830922

 

Constans-like b (COLb)

 

 

Glutamate receptor, ligand channel prot

 

 

Cytokinin independent 2

 

 

Hydroxyproline rich glycoprotein

EU041722

 

FIDDLEHEAD (beta keto acyl CoA synth)

____________________________________________________________________________________________________
47

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

3-beta OH-steroid DH

 

 

Translation initiation factor eIF-3b

U4 snRNA

 

U4 snRNA

 

 

Dicer-like 3, PAZ

 

 

PPR, selenium binding

 

 

Organic cation transport protein

 

 

PK

AF533439

 

G protein alpha II subunit

 

 

Gluconase

 

 

Myosin-like protein

 

 

cp Cu-translocating HMA8

 

 

Protein of unknown function YGGT

 

 

Cyclin-like F-box

 

 

MscS Mechanosensitive ion channel

 

 

Spermine synthase

 

 

Mechanosensitive ion channel

 

 

Proteinase inhibitor I9, subtilisin propeptide

 

 

Mechanosensitive ion channel

 

 

PK

 

 

Mitochondrial substrate carrier

 

 

Heat shock protein Hsp20

LAP2?

 

Peptidase M1, membrane alanine aminopeptidase

 

 

Protein phosphatase 2C-like

 

 

PK

 

 

PK

 

 

Mitochondrial substrate carrier

 

 

IQ calmodulin-binding region

 

 

E-class P450, group I

HSFA

25

Heat shock factor (HSF)-type

 

 

Glutaredoxin-like, plant II

 

 

Mitochondrial substrate carrier

 

 

Peptidase M41

Fts4 AJ635223

FtsH-like protease

 

 

Zn and Cd transporter

 

 

Myb-like DNA-binding region, SHAQKYF class

 

 

ZFP, SWIM-type

 

 

NADH ubiquinone oxidoreductase, 20 kDa subunit

 

 

Ferrochelatase

 

 

LRR

 

 

Endopeptidase, legumain-like

 

 

Helix-loop-helix DNA-binding

 

 

ruv DNA helicase

 

 

 

 

 

S-locus like receptor

 

 

D mannose binding lectin family protein

 

 

L-asparaginase

 

 

Cyclin d3

 

 

Peptidase C1A, papain

 

 

Receptor kinase like protein

 

 

Kinesin-like protein

 

 

Heat shock protein, TTP repeat

 

 

SPla/RYanodine receptor SPRY

 

 

Pathogenesis-related TF

 

 

Polyadenylate binding protein

 

 

Polyadenylate-binding protein

 

 

Transferase

 

 

Transferase

 

 

Transferase

 

 

Heat shock TF 5

 

 

Protein of unknown function, DUF889

 

 

Basic helix-loop-helix protein

 

 

Cold-induced protein

 

 

Abscissic acid responsive elements binding factor 2

 

 

Electron transporter thiol-disulfide

 

 

PPR, putative

 

 

DEM-like protein

 

 

light harvesting complex

 

 

Chlorophyll a/b binding protein

 

 

Protein of unknown function DUF827

 

 

Laccase

 

 

Laccase (diphenol oxidase)

Tic22 (AF095284)

 ---

Tic22 (cp-specific protein)

 

 

Lipin family protein

 

 

Dihyroflavonol-4-reductase, putative

 

 

Isocitrate dehydrogenase (NAD)

 

 

Patatin-like protein

 

 

ABCF DNA binding protein

 

 

Myb, DNA-binding

 

 

EMB1427; tubulin binding

 

 

PK MAPKKK

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Histone acetyltransferase ZFP

 

 

Cyclin-like F-box

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Protein of unknown function DUF889

 

 

Nitrate transporter, putative

 

 

Peptidase S24, S26A and S26B

 

 

LRR, Pistil-specific extensin-like protein

 

 

Prolyl-tRNA synthetase, class IIa

 

 

F-box with TIR

 

 

 

 

 

Short-chain dehydrogenase/reductase

 

 

PK

 

 

TF B3; Cupredoxin

 

 

No apical meristem protein

 

 

ZFP, Tim10/DDP-type

 

 

ZFP, DHHC-type

____________________________________________________________________________________________________
48

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Helix-turn-helix, Fis-type, related

 

 

MtN3 and saliva related transmembrane protein

 

 

Pseudouridine synthase

 

 

Decrease in DNA methylation, acylphosphatase

 

 

Acyltransfer-like protein

 

 

Homeodomain-like SWIRM

 

 

Metal ion binding

 

 

Phosphoesterase

 

 

Nodulin-related

 

 

Heat shock protein binding

 

 

TF HAP5A-like

 

 

Acetolactate synthase (cp precursor)

 

 

ZFP, MYND-type

U15036 (NIP)

16

14-3-3 protein

 

 

serine-tRNA synthetase family

DQ092413

 

Isoamylase

 

 

Ripening responsive protein

 

 

 

 

 

Unknown protein, RF2 protein

 

 

Sabre, maize apt1, root cortex protein

 

 

SNF1-related kinase

 

 

PK

 

 

Serine protease, serpin

 

 

ABC type transport protein

 

 

Protease inhibitor

 

 

Protease inhibitor I4

 

 

Unknown protein, At binding

 

 

PK

 

 

rab geranylgeranyl transferase, putative

 

 

At hyponastic lvs 1

Win?

 

AtCER2 (cuticular wax biosynthesis), transferase

 

 

NADPH  cytochrome P450 reductase

 

 

Myb-type TF

 

 

Cell surface glycoprotein

 

 

Kinase interacting protein 1

 

 

Arginosuccinate lyase

 

 

Kinesin-like protein

PS RT17-1

 

HLH TF, auxin growth promoter, evergrowing

 

 

AtMSL (MSC-like)

 

 

DNAJ heat shock sequence

 

 

Upl1 protease

 

 

Serine carboxypeptidase

 

 

AT-hook motif DNA binding protein

 

 

Ubiquitin-specific protease

 

 

cp nucleoid DNA binding protein-related

 

 

Serpin, putative serine protease

 

 

Mitochondrial dicarboxylate carrier

 

 

Pleckstrin domain containing protein

 

 

PPR-repeat containing protein

 

 

14-3-3 protein (AtGRF8)

 

 

TF, embryo arrest

 

 

PK

 

 

WD-40 transducin

 

 

Cyclin dependent protein kinase delta 2

 

 

AtFIP1 (FH interacting protein)

 

 

 

 

 

ABC transporter 1-like

 

 

HYS1, related

 

 

ZFP; SPla/RYanodine receptor

 

 

Glycoside hydrolase, family 77

 

 

Cyclin-like F-box

 

 

Ribosomal protein L6E

 

 

Aldehyde DH family, putative

 

 

ABC transporter 1-like

 

 

DNA-binding WRKY

 

 

Glycoside hydrolase, family 17

 

 

TPR repeat

 

 

DNA-binding WRKY

Lka

16

Leucine-rich repeat, typical subtype

 

 

Protein of unknown function DUF250

 

 

Terpenoid synthases/protein prenyltransferase

 

 

DNA binding, AP2 homolog

 

 

RNA-binding region RNP-1

 

 

Alba, cp DNA binding

 

 

Protein of unknown function DUF1278

 

 

24 kDa protein SC24

 

 

TF IIS

 

 

Protein of unknown function DUF537

 

 

Protein of unknown function DUF6

 

 

Protein of unknown function DUF6,

 

 

Protein of unknown function DUF6, transmembrane

 

 

Heat shock protein DnaJ, N-terminal

 

 

Carbamoyl-phosphate synthase, GATase region

Sac3

 

Actin/actin-like

 

 

ZFP, RING-type

 

 

Cyclin-like F-box

 

 

PK

 

 

Cyclin-like F-box

 

 

N-terminal protein myristoylation

 

 

Protein of unknown function DUF167

 

 

PK

 

 

U box

 

 

Protein phosphatase 2A

 

 

Cytochrome oxidase

 

 

Ribosomal protein S2

 

 

ZFP, FYVE/PHD-type

 

 

Protein of unknown function DUF239

 

 

Ribosomal protein L17

____________________________________________________________________________________________________
49

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

GT, family 8

 

 

Pectin methylesterase-like

 

 

Auxin-independent growth promoter

 

 

Flavin containing oxidoreductase, class-II

 

 

O-MT

 

 

O-MT

 

 

Phosphatidylinositol 3- and 4-kinase, catalytic

 

 

Acetylglucosamidyltransferase

 

 

PRL1 interacting factor G

 

 

1,3-beta glucan synthase

 

 

MAKKK (alpha)

 

 

DNA ligase like

 

 

Cyclin-like F box

 

 

ABC transporter related

 

 

Polygalacturonase, putative

 

 

U box

 

 

Monovalent cation:proton antiporter

 

 

Branched chain alpha keto acid DH

 

 

ABC transporter-like

 

 

TTP-like helical

 

 

PPR-repeat-containing protein

 

 

Protein of unknown function DUF248,

 

 

Gibberellin 20-oxidase

 

 

DNA polymerase delta catalytic subunit, putative

 

 

DNA polymerase B, exonuclease

 

 

PK

AB044940

 

12-oxy-phytodienoic acid 10,11 reductase

 

 

DNA topoisomerase I, ATP-binding

 

 

Silent information regulator protein Sir2

 

 

Amino acid/polyamine transporter

 

 

Regulator of chromosome condensation/beta-lactamase-inhibitor protein II

 

 

Heat shock protein DnaJ, N-terminal

AAX56952

 

Amino acid transporter II

AAX56952

 

Amino acid/polyamine transporter

 

 

Glycoside hydrolase, family 31

 

 

Beta-galactosidase

Gal3?

35?

Beta-galactosidase

 

 

No apical meristem protein

 

 

Nucellin like protein, peptidase

 

 

Protein of unknown function DUF630

 

 

Amidase

 

 

Protein of unknown function DUF869

 

 

Octicosapeptide/Phox/Bem1p

 

 

 

 

 

Phenylacetic acid degradation-related protein

 

 

Ca-dependent PK

 

 

Ca-dependent PK

 

 

Cleft lip and palate transmembrane 1

 

 

PTP repeat

 

 

Suppressor of gene silencing 3

 

 

Suppressor of gene silencing 3

 

 

Pentatricopeptide repeat

 

 

Frigida-like

 

 

ATP-dependent clpA/B protease

 

 

Respiratory burst oxidase 1

 

 

Respiratory burst oxidase 1 (NADPH oxidase)

BAC06184

 ---

110 kd Tudor domain protein (RNA binding)

PSA17329

 ---

Calnexin precursor

 

 

Calcium-binding; Adenine nucleotide translocator

 

 

Short-chain dehydrogenase/reductase

 

 

Protein of unknown function DUF339

 

 

Phosphoinositide binding protein

Uni (AF010190)

36

Floricaula/leafy protein, FLO

 

 

AP2 domainTF

 

 

WD40-like

 

 

 

 

 

Glycoside hydrolase family 28

 

 

Exostosin-like

AM161934

 ---

Selenium binding protein

 

 

pentatricopeptide repeat

 

 

adenosylhomocysteinase (ACH1)

 

 

Aspartate kinase homoserine DH like protein

 

 

PK LRR

 

 

UDP-glucose:anthocyanin 5 O glucosyltransferase

 

 

UDP-glucose:anthocyanin 5 O glucosyltransferase

 

 

UDP-glucose:anthocyanin 5 O glucosyltransferase

 

 

ZFP, C2H2-type

 

 

SNF2-domain containing protein

 

 

Xyloglucan endotransglycosylase, putative

 

 

Xyloglucan endotransglycosylase, putative

 

 

Protein binding/transporter

 

 

ZFP, C2H2-type

 

 

Kinesin, motor region; Kinesin-related

 

 

DNA topoisomerase I

AJ621573

 ---

Phytoene desaturase

 

 

tospovirus res pro C

 SEP3

38

SEP3 MADS box

 

 

PAKRP1 (phragmoplast assoc. protein)

 

 

Phosphoribosylformylglycinamidine synthase

 

 

Nuclear transport factor 2

 

 

Histidine kinase A

____________________________________________________________________________________________________
50

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

ZFP

 

 

Plant lipid transfer/trypsin-alpha amylase inhibitor

 

 

Centromere protein B, DNA-binding region

 

 

Alkylated DNA repair protein

 

 

2OG-Fe(II) oxygenase

 

 

ZFP, MYND-type Cyclin-like F-box

 

 

DNA-binding HORMA

 

 

Mitochondrial import receptor subunit TOM20-2

 

 

Microtubule-associated protein

 

 

Engulfment and cell motility, ELM

 

 

Exostosin-like

 

 

Ribosomal protein L22/L17

 

 

AAA ATPase

 

 

GTPase EngC

 

 

Kelch repeat containing F box

 

 

Ubiquitin protein ligase

 

 

Ankyrin

 

 

Urease, gamma/beta/alpha type

 

 

PK, cell division cycle 2-like family

 

 

Monooxygenase, FAD-binding

 

 

Enoyl-CoA hydratase/isomerase

 

 

Histidine amino acid transprter

 

 

Ankyrin repeat like protein

PSY14559

 

DNA topisomerase II

 

 

Cyclin like Fbox

 

 

Cell cycle checkpoint protein MAD2

 

 

Protein of unknown function,  DUF889

 

 

Protein phosphatase 2A, regulatory B subunit, B56

 

 

Transferase

 

 

Heat shock protein Hsp20

 

 

Disease resistance protein

 

 

Response regulator, RegA/PrrA/ActR type

 

 

Receptor kinase, putative

 

 

ZFP, RING-type

 

 

Prefoldin; t-snare

 

 

Short-chain dehydrogenase/reductase

 

 

Short-chain dehydrogenase/reductase

 

 

Photosystem II core complex

 

 

60 kDa inner membrane insertion protein

X80007

 

Naringen-chalcone synthase

 

 

Pectate lyase

 

 

Chaperonin Cpn60/TCP-1 epsilon subunit

 

 

Oxysterol binding protein

 

 

Cyclic peptide transporter

 

 

O-glycosyl hydrolase, putative

 Aatc

39

 

 

 

PK

 

 

MAP kinase phosphatase and dual specificity protein

 

 

Auxin independent growth protein

 

 

Glycoside hydrolase, clan GH-D

 

 

Quinolinate synthase A-like

 

 

Protein of unknown function DUF707

 

 

Phosphoinositide-binding clathrin adaptor

 

 

ZFP, RING-type:

 

 

ZFP, RING-type

 

 

Glycoside hydrolase, family 5

 

 

ZFP, C6HC-type

 

 

LMBR1-like conserved region

 

 

Lipase, class 3

 

 

PK

 

 

Nucleolar antigen-like

 

 

Ras GTPase

 

 

Heat shock protein DnaJ, N-terminal

 

 

Receptor-like kinase

 

 

ZFP, transparent testa 1-like

 

 

Ubiquitin specific protease

 

 

Ribosomal L23 and L15e

 

 

Asparagine synthase (partial)

 

 

Cyclin-like F-box FBD

 

 

C2 calcium/lipid-binding region, CaLB (triplicated)

 

 

Cyclin-like F-box

 

 

Peroxisomal ABC transporter

 

 

TPR repeat

 

 

Lipoxygenase, LH2

 

 

Lipoxygenase, LH2

 

 

Ethylene insensitive 3

 

 

Myo-inositol-1-phosphate synthase

 

 

Transferase

 

 

Peptidase S8 and S53

 

 

Sulfate transporter

 

 

Peptidase A1, pepsin

 

 

C2 calcium/lipid-binding protein, CaLB

 

 

RNA binding protein, RNP-1

 

 

Short-chain dehydrogenase/reductase

 

 

Short-chain dehydrogenase/reductase

 

 

ZFP, RING-type

 

 

TGA basic leucine zipper

 

 

Gamma glutamyl transferase

 

 

Long chain acyl CoA synthase

 

 

Photosystem II 22kd protein precursor

MNSOD

40

 

AB087852

 

 Dof7 Zn finger

 

 

 

 

 

6-phosphogluconolactonase

 

 

GT, family 8

 

 

LRR

 

 

PK LRR

 

 

PK

 

 

Small heat shock protein

____________________________________________________________________________________________________
51

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

ABC transporter

 

 

RNA-binding region RNP-1 (RNA recognition motif)

 

 

RNA-binding, Ser/Arg-rich pro 34A

 

 

Auxin-independent growth promoter

 

 

MscN4 putative nodule membrane protein

 

 

Ribosomal protein S30EA

PRR59

44

Pseudo response regulator 59; CCT

 

 

Harpin-induced 1

 

 

Transparent testa, Glabra 1 protein

 

 

WD-40 TF

 

 

2OG-Fe(II) oxygenase

 

 

Caffeic acid O-methyltransferase, family 2

NPAC

44

Nascent polypeptide-associated complex NAC

 

 

Nascent polypeptide-associated complex NAC; UBA-like

 

 

Haem peroxidase

 

 

General substrate transporter

 

 

Peptidase M20

 

 

No apical meristem protein

 

 

General substrate transporter

 

 

Calcium-binding EF-hand

 

 

Terpenoid synthases/protein prenyltransferase 

 

 

Ribosomal protein L9

 

 

Heat shock protein Hsp20

 

 

Terpenoid synthases

 

 

Protein of unknown function DUF895 (duplicated)

 

 

 

 

 

RNA binding-like protein

 

 

Prefoldin

 

 

Phosphatase associated protein 46 kd

 

 

ZFP, RING-type

 

 

Glycogen/starch synthases, ADP-glucose type

 

 

ClpX, ATPase regulatory subunit

 

 

Ubiquitin ligase, SINA

 

 

TTP-like helical

 

 

TTP-like helical

 

 

Esterase/lipase/thioesterase

 

 

Phosphatidylinositol 3- and 4-kinase

 

 

Pectinesterase; Pectinesterase inhibitor

 

 

Peptidase S26A, signal peptidase I

 

 

2OG-Fe(II) oxygenase

 

 

Glycoside hydrolase, family 1

 

 

Histone-lysine N-Me transferase

 

 

ZFP, SWIM-type

 

 

Protease inhibitor I4

 

 

Cellulose synthase-like 3

 

 

ZFP, U1-type

 

 

Ubiquitin ligase, Zinc ion binding

 

 

Phosphomevalonate kinase Erg8

 

 

2-oxo-acyl synthase-like protein

 

 

Spermine synthase

 

 

Ion transport protein; Cyclic nucleotide-binding

 

 

Protein phosphatase 2C-like

 

 

Heat shock protein DnaJ, N-terminal

 

 

MtN3-like

 

 

Sigma-70 factor

 

 

DNA-binding WRKY

 

 

Basic HLH family protein

Adh1

51

 

 

 

Glycoside hydrolase, family 9

 

 

Glycolipid transfer protein

 

 

Chaperonin, AP2 TF, and endomembrane protein 70 sequences

 

 

Electron carrier/oxidoreductase

 

 

PK LRR

 

 

 

 

 

Delta-aminolevulinic acid dehydratase

 

 

Peptidase M20

 

 

BTB/POZ TRAF-like

 

 

Galactose-binding like

 

 

8-oxoguanine DNA-glycosylase

 

 

ZFP, CCHC-type

 

 

SWIRM domain-containing protein

 

 

Root-specific metal transporter

 

 

Photosynthetic reaction center protein

 

 

Root-specific metal transporter

 

 

Transferase

 

 

Ankyrin

 

 

Embryo defective putative replication factor

 

 

 

 

 

Calcium-binding pollen allergen

 

 

ZFP, RING-type

 

 

Acetyl-CoA synthetase, putative;Rhodopsin-like GPCR superfamily

 

 

Elongation factor P/YeiP

 

 

Myb containing protein

 

 

RNA-binding region RNP-1

 

 

Calmodulin binding, putative

 

 

Beta 1,3-glucanase

 

 

Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2

 

 

O-MT, family 2; Dimerisation

 

 

Ribosomal protein S2; Squalene/phytoene synthase

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

PTP repeat

 

 

ATP-dependent RNA (DEAD/DEAH box) helicase

 

 

Lipid binding xylogen like protein 10

 

 

Phytase; Purple acid phosphatase

 

 

Metallophosphoesterase; Purple acid phosphatase, N-terminal

____________________________________________________________________________________________________
52

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Sodium/hydrogen exchanger

 

 

TAFII55 protein conserved region

 

 

Naringinen-Chalcone synthase

X80007 CHS2

 

Naringinen-Chalcone synthase

 

 

Protein of unknown function DUF803

 

 

Down-regulated in metastasis

 

 

Aminotransferase, cysteine desulfurase

 

 

Rhodanese-like

 

 

RNA-binding region RNP-1

 

 

Protein of unknown function DUF889

 

 

NAD-dependent sugar epimerase;

 

 

Carbohydrate transporter

 

 

Ubiquitin-like protein

 

 

Auxin responsive SAUR protein

 

 

Auxin responsive SAUR protein

 

 

Adenosylhomocysteinase (ACH2)

 

 

Subtilisin like peptidase

 

 

Heavy metal transport/detoxification protein

 

 

Heavy metal transport/detoxification protein

 

 

Steroid nuclear receptor, ligand-binding

 

 

Peptidase C1A, papain

 

 

NADH dehydrogenase subunit 4

 

 

O-glycosyl hydrolase

 

 

RNA binding protein, RNP-1

 

 

ZFP, RING-type

 

 

Zinc ion binding transcription factor

 

 

RNA-binding region

 

 

AMP-dependent synthetase and ligase

 

 

Rubisco MT

 

 

Inorganic phosphate transporter

 

 

Ribosomal protein L13, organelle form

 

 

ZFP, ZZ-type

 

 

G-D-S-L lipolytic enzyme

 

 

Protein of unknown function DUF1664

 

 

BTB/POZ; Ankyrin

Acp3

54

 

 

 

Beta-D-glucan exohydrolase, putative

 

 

TIR-NBS-LRR disease resistance protein, AtRPP5

 

 

TIR-NBS-LRR disease resistance protein

 

 

Zinc knuckle family protein

 

 

Ubiquitin-specific protease

 

 

Ubiquitin-specific protease

 

 

PTP repeat protein

 

 

ATP-dependent DNA helicase, putative

 

 

PTP repeat 

 

 

Haem peroxidase

 

 

ATP-dependent DNA helicase, putative

 

 

ATP-dependent helicase

 

 

Lyk3 gene for LysM receptor kinase (partial?)

 

 

Ser/Thr protein phosphatase

 

 

Cation diffusion facilitator

 

 

Leucine zipper, homeobox-associated

 

 

Transmembrane coiled-coil

 

 

Helicase-like

 

 

Receptor-like kinase LysM domain

 

 

1,3-beta gluconase, putative

 

 

MDR like ABC transporter

 

 

PTP repeat containing protein, putative

 

 

Sugar transporter like protein

 

 

N7 protein like

 

 

N7 protein like

 

 

Cyclin-like F-box

 

 

N7 like protein, Cyclin-like F-box, putative nodulin

 

 

N7 like protein, putative nodulin

 

 

Cyclin-like F-box

 

 

Xanthine/uracil/vitamin C permease

 

 

Beta 1,3 gluconase-like

 

 

Nematode resistance like protein, LRR

 

 

Disease resistance protein TIR; LRR

 

 

Phosphoinositide-binding clathrin adaptor

 

 

Copper amine oxidase

 

 

Thioredoxin-related

 

 

Cytochrome P450-like protein

 

 

ZFP, HAT dimerization

 

 

 

 

 

Aspartyl aminopeptidase-like

 

 

4-coumate CoA ligase

 

 

4-coumate CoA ligase

 

 

PK LRR

 

 

Argininosuccinate synthase duplicated

 

 

Cycloeucalenol cycloisomerase , putative

 

 

RNA-metabolising metallo-beta-lactamase

 

 

20S proteasome, A and B subunits

 

 

Calcium-binding EF-hand

 

 

Calcium-binding EF-hand

 

 

Forkhead associated

 

 

 

 

 

Pyruvate dehydrogenase E1 beta subunit

 

 

S-2-OH acid oxidase (peroxisomal)

 

 

WNK kinase 3

 

 

Translation elongation factor A (TufA)

 

 

Argonaute-like sequence

 

 

Asymmetric lvs (As2)-like sequence

 

 

Anthranilate synthase component I 

 

 

Trehalose 6-P synthetase, putative

____________________________________________________________________________________________________
53

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

PK

 

 

LRR

 

 

Calcium/lipid-binding region, CaLB C2

 

 

Octicosapeptide/Phox/Bem1p, cercropin

 

 

IAA-amino acid hydrolase related

 

 

Ribosomal protein L27A

 

 

Copper amine oxidase

 

 

Histone deacetylase superfamily

 

 

PTP repeat

 

 

Protein of unknown function DUF260

PSA426475

 

Raffinose synthase

 

 

D111/G-patch

 

 

Chaperonin Cpn10; GroES-like

 

 

Short-chain dehydrogenase

 

 

TF jumonji, jmjC

 

 

Protein of unknown function DUF239

 

 

Cytochrome P450-like

 

 

Phosphoribosyl anthranilate transferase

 

 

Phox-domaining containing protein

 

 

Protein of unknown function DUF250

 

 

Myb, DNA-binding

 

 

Boron transporter

 

 

Centromere protein B, DNA-binding region

 

 

FeS cluster assembly scaffold

 

 

Nitrogen-fixing NifU-like, N-terminal

 

 

Pantothenate kinase

 

 

ZFP, Dof-type

 

 

Serine/threonine-PK ATM , putative

 

 

ATM protein

 

 

NAD+ ADP-ribosyltransferase

 

 

Carbonic anhydrase

 

 

Carbonic anhydrase

 

 

Protein of unknown function DUF1645

 

 

ATM protein

 

 

HMG-I and HMG-Y, DNA-binding

 

 

E-class P450, group I

 

 

Cytochrome P450-like

 

 

ATP-binding region, ATPase-like

 

 

Phox-like

 

 

Protein of unknown function DUF6

 

 

Myb-like protein

 

 

Boron transporter

 

 

CENP-B protein; Homeodomain-like

 

 

Nitrogen-fixing NifU-like, N-terminal

 

 

FeS cluster assembly scaffold IscU

 

 

Pantothenate kinase

 

 

 

 

 

Protein of unknown function DUF6, transmembrane

 

 

Putative protein

 

 

emp24  protein

 

 

TF, TINY-like protein

 

 

25.7 kd protein

 

 

ZFP, RING-type

 

 

Phosphotidylinositol-4-phosphate-5-kinase

 

 

TF b2

 

 

Aminotransferase

 

 

Aminotransferase

 

 

Aminotransferase

 

 

GRAS TF

 

 

Curculin-like (mannose-binding) lectin

 

 

Flavonol synthase

 

 

Flavonol synthase

 

 

Camphor resistance CrcB protein

 

 

Camphor resistance CrcB protein

 

 

Auxin influx carrier protein

 

 

PTP repeat

 

 

ZFP, C2H2-type

 

 

Fatty acid condensing enzyme, putative

 

 

PK

 

 

Oxysterol binding protein, putative

 

 

Unknown protein

 

 

NFU domain protein

 

 

 

 

 

Chromosomal remodeling protein 42

 

 

Sodium/hydrogen exchanger

 

 

Sodium/hydrogen exchanger

 

 

Multicopper oxidase

 

 

Trimeric lipoxygenaseA-like

 

 

Prephenate DH

 

 

Sodium/hydrogen exchanger

 

 

Heavy metal transport/detoxification protein

 

 

Wound-induced WI12

 

 

Wound-induced WI12

 

 

Clp uroporphyrinogen decarboxylase

 

 

Serine/threonine PK, related

 

 

TGF-beta receptor, type I/II extracellular region

 

 

Haem peroxidase

 

 

Haem peroxidase

 

 

Hypoxia induced protein conserved region

 

 

NBS-LRR

 

 

Translation elongation factor, GTP-binding

 

 

Translation elongation factor, GTP-binding

 

 

Amino acid/polyamine transporter II

 

 

Amino acid/polyamine transporter II

 

 

TTP-like helical

 

 

TGF-beta receptor, type I/II extracellular region

 

 

Serine/threonine PK

 

 

Uroporphyrinogen decarboxylase, partial

____________________________________________________________________________________________________
54

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Golgi nucleotide sugar transporter

 

 

Nucleotide triphosphatase

 

 

Peptidase S1 and S6; Peptidoglycan-binding LysM

 

 

TF b4

 

 

 

 

 

N7-like protein, nodulin

 

 

Linker histone, N-terminal

 

 

Agenet

 

 

Nodulin

 

 

Hin19-related, RNA binding

 

 

Glycoside hydrolase, family 17

 

 

Myb, DNA-binding

 

 

ZFP, C6HC-type

 

 

ZFP, C6HC-type

 

 

Protein of unknown function DUF26

 

 

Chromosome condensation protein-like

Gsn (pGS341)

58

Glutamine synthetase (nodule specific)

 

 

RNA-binding region

 

 

Splicing factor 3B-like

 

 

Peptidase A1, pepsin

 

 

mt NADH dehydrogenase

 

 

ATPase, DEAD/DEAH box helicase

 

 

MADS-boxTF AGL45

 

 

Fungal elicitor protein

 

 

ZFP, C2H2-type

 

 

HEAT repeat-like protein

 

 

NMD3

 

 

Protein of unknown function DUF635

 

 

Myb-like DNA-binding region, SHAQKYF class

 

 

Cytochrome c oxidase assembly protein

 

 

C2 calcium/lipid-binding region, CaLB

 

 

Glutamate decarboxylase

 

 

Glutathione S-transferase, partial

 

 

Protein of unknown function DUF889

 

 

Sucrose synthase

 

 

Regulator of chromosome condensation; ZFP

 

 

Expansin 45

 

 

Myb TF

 

 

UDP--glucose-pyrophosphorylase, partial

 

 

Global transcription factor group C 102

 

 

AMP-dependent synthetase and ligase family

 

 

Lysine-specific histone demethylase

 

 

2Fe-2S ferredoxin, iron-sulfur binding site-5prime partial

 

 

Polyamine oxidase

 

 

Polyamine oxidase

 

 

Arginyl tRNA synthetase (partial?)

 

 

Integral membrane family protein

 

 

SWIB complex

 

 

SWIB complex

 

 

ZFP-like

 

 

SWIB complex

 

 

SWIB complex

 

 

Ca-dependent PK-like

 

 

tRNA-splicing endonuclease

 

 

Proteinase inhibitor I4, serpin

 

 

Helicase SEN1, related

 

 

Beta-catenin-like protein 1 , related

 

 

Hydrolase

 

 

Serine/tyrosine PK

 

 

Receptor kinase-like

 

 

Auxin response factor TF b3

 

 

 

 

 

Protein of unknown function DUF231, plant

 

 

ATP-dependent helicase, DEAD-box

 

 

Glycoside hydrolase, family 85

 

 

NADH plastoquinone oxidoreductase

 

 

Histidine acid phosphatase

 

 

Eukaryotic translation initiation factor 2, alpha

 

 

Eukaryotic translation initiation factor 2, alpha

 

 

Eukaryotic translation initiation factor 2, alpha subunit

 

 

Protein of unknown function DUF248

 

 

Glutaredoxin

 

 

Serine/threonine PK

 

 

PK, putative

 

 

Outer membrane protein

 

 

Lateral organ boundaries-like 1

 

 

Transferase family

 

 

ZFP, RING-type

 

 

Disease resistance protein- Rps-1-k-2

 

 

major histocompatibility complex

 

 

Peptidase aspartic, active site

 

 

Basic helix-loop-helix dimerisation region

 

 

Clathrin propeller, N-terminal

 

 

Ribosomal protein L1

Histone 4

 

Histone H4

 

 

N-(5 phosphoribosyl) anthranilate isomerase

 

 

2OG-Fe(II) oxygenase

 

 

Serine/threonine PK

 

 

Electron transporter transcription factor

PSPLC

 

Phospholipase C

 

 

Phosphatidylinositol-specific phospholipase C

 

 

Protease inhibitor I25

 

 

Phosphatidylinositol-specific phospholipase C

 

 

ZFP, SWIM-type FAR1

 

 

Peptidyl-prolyl cis-trans isomerase, cyclophilin

____________________________________________________________________________________________________
55

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

GINS complex, Psf3 component

 

 

PK-like

 

 

Arginyl tRNA protein transferase

 

 

Chlorophyll a/b binding protein, putative

 

 

Cytochrome P450 family

 

 

Nuclear pore protein related protein

 

 

ABC-1 protein, putative

 

 

GINS complex, Psf3 component

 

 

Early flowering 4-like

 

 

Cyclophilin

 

 

Anthranilate synthase alpha subunit I

 

 

Protein of unknown function DUF889

Hs1pro-1

 

Nematode resistance homolog

 

 

Receptor kinase-like protein

Trg-31

 

Aquaporin PIP type 7a

 

 

26S proteosome subunit

 

 

Transferase

 

 

Coronatine-insensitive 1

AM161697

60

Sedoheptulose 1,7 bisphosphatase

 

 

Acid phosphatase (Class B)

 

 

No apical meristem protein

 

 

No apical meristem protein

 

 

Organic anion transporter, putative

 

 

Proline transporter

 

 

Concanavalin A-like lectin/glucanase

 

 

adenyl cyclase, partial

 

 

G-D-S-L lipolytic enzyme

 

 

Protein of unknown function DUF620

 

 

UDP-glucuronosyl/UDP-glucosyltransferase

 

 

UDP-glucuronosyl/UDP-glucosyltransferase

 

 

guanylyl cyclase-like protein, putative

 

 

G-D-S-L lipolytic enzyme

 

 

Ras small GTPase, Rab type

 

 

Peptide transporter

 

 

Lim domain-containing protein

 

 

Peptide transporter POT family

 

 

TGF-beta receptor, type I/II

 

 

Histidine triad protein

PSPLC

 

Phosphatidylinositol-specific phospholipase C

 

 

NBS-LRR

 

 

2-nitropropane dioxygenase, NPD

 

 

Delta l-pyrroline-5-carboxylate synthetase

 

 

GDP-mannose pyrophosphorylase

 

 

PK, putative

 

 

Ankyrin protein

 

 

 

 

 

AAA ATPase; 26S proteasome subunit P45

 

 

Blue light receptor phototropin

 

 

PK

 

 

PK; adipokinetic hormone

 

 

Ribosomal protein L10E

 

 

Cation efflux protein

 

 

Glucose transporter KH, type 1

 

 

Chromogranin/secretogranin

 

 

Root phototrophism 2

 

 

 

 

 

Nucellin

 

 

Pepsin A

 

 

Peptidase aspartic, catalytic

 

 

Neutral/alkaline nonlysosomal ceramidase

 

 

Mitotic cyclin B1-1

 

 

DNA helicase, putative

 

 

DNA helicase, related

 

 

Heterogeneous nuclear ribonucleoprotein

 

 

histone 4

 

 

transducin family, WD-40 protein

 

 

Protein transport protein

 

 

CAATT binding TF

 

 

 

 

 

MAP kinase

 

 

Mitotic cyclin B1 type

 

 

Pectinesterase inhibitor

 

 

Mitotic cyclin B1 type

 

 

Pectinesterase inhibitor

 

 

Mitotic cyclin B1 type

 

 

Pectinesterase inhibitor

 

 

Mitotic cyclin B1 type

 

 

Pectinesterase inhibitor

 

 

Prefoldin

 

 

Phosphatidylinositol transfer protein-like, N-terminal

 

 

RNA polymerase, RpoA/D/Rpb3-type

 

 

Nucleolar NOL1

 

 

ATPase coupled with transmembrane transport

 

 

ZFP, RING-type

 

 

Chaperonin clpA/B

 

 

Calcineurin B-like protein, putative

 

 

Peptidylprolyl isomerase, FKBP-type

 

 

B-type Cyclin

 

 

Clavata-like PK

 

 

Kinesin, motor region Calponin-like actin-binding

 

 

Protein prenyltransferase TTP-like helical

 

 

Myb, DNA-binding; TTP-like helical

 

 

Phosphoribulokinase/uridine kinase

 

 

BTB/POZ; TRAF-like

 

 

Proteinase inhibitor I9

 

 

Isopenicillin N synthetase; KH, type 1

 

 

UBA-like aspartic peptidase

 

 

Nucleotide binding protein

 

 

ZFP, TTF-type, HAT dimerization

 

 

1,4-alpha-glucosidase

____________________________________________________________________________________________________
56

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

TF b3

 

 

TF b3

 

 

TF b3

 

 

TF b3

 

 

Amino acid permease

 

 

Amino acid/polyamine transporter II

 

 

 

 

 

LRR

 

 

Kinesin, motor region

 

 

C2 calcium/lipid-binding region

 

 

LRR, ribonuclease inhibitor type

 

 

HTH, Fis-type, related

 

 

RNA-binding region RNP-1

 

 

Serine/threonine PK (duplicated)

 

 

Frigida-like

 

 

DNA-binding WRKY

 

 

GRAS TF

 

 

ZFP, CCCH-type

 

 

Peptidase M, neutral zinc metallopeptidases

 

 

Putative late blight resistance protein homolog

 

 

Disease resistance protein, t-snare

 

 

NB-ARC LRR

 

 

Domain of unknown function DUF223

 

 

Domain of unknown function DUF223

 

 

 

 

 

Translation initation factor

 

 

GDP-D-mannose 3',5' epimerase

 

 

Linolool synthase

 

 

Syntaxin/epimorphin family

 

 

WD-40 repeat

 

 

gamma subunit cp ATP synthase

 

 

Protein of unknown function DUF584

 

 

Myb family TF

 

 

G-D-S-L motif lipase/hydrolase family

 

 

Unknown bromodomain protein

 

 

RNA helicase

 

 

Phosphoribosylformylglycinamidine cyclo-ligase (plastid)

 

 

Jasmonate O-MT, partial

 

 

DEAD/DEAH box helicase, N-terminal

 

 

Lipolytic enzyme, G-D-S-L

 

 

Protein of unknown function DUF889

 

 

Lipolytic enzyme, G-D-S-L (duplicated)

 

 

Myb, DNA-binding

 

 

Protein of unknown function DUF584

 

 

gamma subunit cp ATP synthase

 

 

WD-40 repeat

 

 

Syntaxin/epimorphin family

 

 

Ubiquitin

 

 

UDP-glucuronosyl/UDP-glucosyltransferase

 

 

 

 

 

E-class P450, group I

 

 

E-class P450, group I

 

 

E-class P450, group IV

 

 

E-class P450, group I

 

 

E-class P450, group I

 

 

E-class P450, group I

 

 

E-class P450, group I

 

 

E-class P450, group I

 

 

E-class P450, group I

 

 

E-class P450, group I

 

 

Ent-kaurene synthase

 

 

 

 

 

Glutamyl-tRNA amidotransferase subunit

 

 

Citrate synthase 2

 

 

LRR

 

 

LRR

 

 

Protein of unknown function DUF889

 

 

Protein of unknown function DUF1278

 

 

Unknown protein

 

 

Unknown protein

Gpt (AF020841)

70

Tpt phosphate/phosphoenolpyruvate translocator Tpt

 

 

Tryptophan synthase (beta 2 chain)

 

 

Forkhead-associated

 

 

Cyclin-like F-box

 

 

 

 

 

P-type trefoil

 

 

UDP-glucuronosyl/UDP-glucosyltransferase

 

 

Microtubule-associated protein

 

 

Protein of unknown function DUF889

 

 

DNA polymerase A family protein

 

 

DNA-directed DNA polymerase

 

 

Protein of unknown function (duplicated)

AJ312062

 

ZFP, CCCH-type

 

 

Sister chromatid cohesion protein

 

 

N-acetyltransferase, related

 

 

PK

 

 

Ankyrin

 

 

Ankyrin

 

 

Ankyrin

 

 

Beta fructosidase (partial), pollen allergen

 

 

Tryptophan synthase beta subunit

 

 

Biopterin transport-related protein BT1

 

 

Prolyl 4-hydroxylase, alpha subunit

 

 

Cytochrome P450

 

 

Purple acid phosphatase-like

 

 

Like-Sm ribonucleoprotein-related, core

 

 

Heat shock protein Hsp70

 

 

Aminopetidase, acyl  peptide hydrolase-like

____________________________________________________________________________________________________
57

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

 

 

 

Phospholipid/glycerol acyltransferase

 

 

Plant basic secretory protein

 

 

Cyclin-like F-box

 

 

Prolyl-tRNA synthetase

 

 

Proteinase inhibitor I4, serpin

 

 

Cyclin-like F-box

AY289132

 

Replication factor 70 kDa

 

 

PK

 

 

Cyclin-like F-box

 

 

1,3-beta glucan synthase/transferase

 

 

Sucrose-phosphate synthase 2

 

 

Lectin, beta domain

 

 

Triacylglycerol lipase, related

 

 

Cytochrome b561 / ferric reductase transmembrane

 

 

ZFP, CCHC-type

 

 

Sulfotransferase

 

 

 

 

 

Urocanase

 

 

Myb 60-like protein

 

 

ZFP CCHC-type

 

 

Hemopexin

 

 

 

 

 

Exo70 exocyst complex subunit

 

 

DNA-binding WRKY

 

 

Cyclin-like F-box, xylose isomerase

 

 

Cyclin-like F-box

 

 

 

 

 

Polygalacturonate 4-alpha galactuonosyltransferase

 

 

Mo25 family protein

 

 

PTP repeat containing protein

 

 

Auxin response family protein

 

 

Phytochrome A signal transduction (AtPAT1)

 

 

GDP-mannose pyrophosphorylase (AtCYT1)

 

 

Glycosyl hydrolase family protein

 

 

ZFP

 

 

67 kD clp RNA binding protein (salt-inducible)

 

 

Cytochrome P450 protein, putative

 

 

Polygalacturonase, BURP-containing

 

 

Outward rectifier potassium channel (AtKCO1)

 

 

70 kD microtubule associated protein

 

 

 

 

 

AHC1 gene homolog

 

 

Proline-rich protein homolog

 

 

mt AKIN beta2

 

 

 

 

 

LRR

 

 

RbcL

 

 

LRR

 

 

TPR repeat

 

 

Photosystem I psaA and psaB

 

 

Ribosomal protein S14

 

 

hypothetical pro

 

 

Ribosomal protein S12, bacterial and chloroplast form

 

 

Ribosomal protein S7, bacterial and organelle form

 

 

NADH/Ubiquinone/plastoquinone (complex I)

 

 

NADH/Ubiquinone/plastoquinone (complex I)

 

 

Protein ycf2, putative

 

 

Ribulose bisphosphate carboxylase, large chain

 

 

Maturase-related, N-terminal

 

 

Ribosomal L23 protein

 

 

Ribosomal protein L2

 

 

Ribosomal protein S19/S15

 

 

H+-transporting two-sector ATPase, alpha/beta subunit

 

 

H+-transporting two-sector ATPase, delta/epsilon subunit

 

 

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3

 

 

LRR

 

 

NB-ARC domain

 

 

Lustrin A-like protein

 

 

NB-ARC LRR

 

 

NB-ARC LRR

 

 

NB-ARC LRR

 

 

LRR

 

 

FAD linked oxidase

 

 

Cyclin-like F-box; FBD

 

 

Cyclin-like F-box; FBD

 

 

LRR, cysteine-containing subtype

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

F-box domain

 

 

Cyclin-like F-box

 

 

 

 

 

Seed maturation protein

 

 

LRR

 

 

Organ-specific protein S2-like

 

 

NB-ARC LRR

 

 

NB-ARC LRR

 

 

NB-ARC LRR

AJ251969

 

Peptidase S10, serine carboxypeptidase

 

 

WD-40 repeat

 

 

GCN5-related N-acetyltransferase

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

PK

 

 

RNA binding protein 1

 

 

Lipocalin

 

 

Protein of unknown function DUF889,

____________________________________________________________________________________________________
58

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Cyclopropane fatty acid synthase-like

 

 

NBS-LRR

 

 

Glucosyl hydrolase, beta glucosidase

 

 

beta glucosidase

 

 

Amino acid transporter family

 

 

Pectinesterase family protein

 

 

Amino acid/polyamine transporter II

 

 

Plant invertase/pectin methylesterase inhibitor

 

 

SMC protein, N-terminal

 

 

Sigma-70 region 2

 

 

Resistance protein KR4, related

 

 

NBS LRR

 

 

NBS LRR

 

 

NBS LRR

 

 

NBS LRR

 

 

PTP repeat

 

 

Amine oxidase

 

 

LRR

 

 

NBS LRR

 

 

Sigma-70 region 4

 

 

LRR

 

 

Alpha-N-acetylglucosaminidase

 

 

Alpha-N-acetylglucosaminidase precursor

 

 

Alpha-N-acetylglucosaminidase precursor

 

 

NB-ARC LRR

 

 

Homeodomain-like

 

 

NB-ARC LRR

 

 

Cyclin-like F-box

 

 

NB-ARC LRR

 

 

Protein phosphatase 2C-like

 

 

Protein phosphatase

 

 

Protein phosphatase

 

 

Gamma purothionin

 

 

Cycloartenol-C-24-methyltransferase

 

 

NBS-LRR

 

 

AT-hook motif containing protein

 

 

AT-hook motif containing protein

 

 

NBS-LRR

 

 

NBS-LRR

 

 

Putative helicase, related

 

 

Protein of unknown function DUF889, eukaryote

 

 

LRR

 

 

Disease resistance protein

 

 

Disease resistance protein

 

 

S-receptor kinase-like protein , related

 

 

PK

 

 

NBS LRR

 

 

Glucose-inhibited division protein A

 

 

Protein of unknown function DUF889

 

 

LRR

 

 

LRR

 

 

NBS LRR

 

 

LRR FNIP

 

 

 

 

 

Antiporter/drug transporter

 

 

PTP repeat

 

 

Ribosomal protein S2

 

 

ZFP CCCH type TF

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box, inorganic pyrophosphatase

 

 

Protein of unknown function DUF860

 

 

Protein of unknown function DUF860

 

 

Cellulose synthase

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Prefoldin

 

 

F-box protein interaction domain

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box, xylose isomerase

 

 

Cyclin-like F-box, xylose isomerase

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box (no homol other than Mt)

 

 

Late nodulin

 

 

Cyclin-like F-box

 

 

PTP repeat

 

 

Cyclin-like F-box

 

 

Glycoside hydrolase, family 28

 

 

Actin/actin-like

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

MADS-box TF

 

 

MADS-box TF

 

 

Dihydrouridine synthase

 

 

Protein of unknown function DUF1092

 

 

NBS-LRR

____________________________________________________________________________________________________
59

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

PTP repeat

AF123696

 

NBS-LRR

 

 

ZFP C3HC4 type

 

 

Cation/hydrogen exchanger

Y14559

 

Topoisomerase II

 

 

 

 

 

Nucleic acid binding protein

 

 

Syntaxin, putative

 

 

ZFP, CCCH type

 

 

ZFP, CCCH type

 

 

Transferase family protein

AB097768

 

ZFP, RING-type (partial), makorin 

 

 

Transferase

 

 

 

 

 

Uroporphiryn-III C-MT

 

 

Prefoldin

 

 

Asp/Glu racemase; TTP-like

 

 

Disease resistance protein, Myb DNA binding

 

 

Auxin-independent growth promoter-like

 

 

 

 

 

Lipolytic enzyme, G-D-S-L

 

 

O-MT family 2

 

 

NBS-LRR

 

 

NBS-LRR

 

 

Beta tubulin

 

 

LRR

 

 

LRR

 

 

NBS-LRR

 

 

Protein of unknown function DUF231

 

 

NBS-LRR

 

 

Protein of unknown function DUF231

 

 

Subtilin inhibitor

 

 

NBS-LRR

 

 

Terpenoid synthase-like

 

 

Homeodomain-like

 

 

Calmodulin-binding

 

 

Cytochrome P450

 

 

Isopentenyl transferase-like

 

 

Isopentenyl transferase-like

 

 

Ribosomal protein L27

 

 

Short-chain dehydrogenase/reductase

 

 

TIR disease resistance protein

 

 

TIR disease resistance protein

 

 

NBS-LRR

 

 

NPAC

 

 

hAT family dimerization domain containing protein

 

 

hAT family dimerization domain containing protein

 

 

TIR domain

 

 

Disease resistance protein TIR; LRR

 

 

NBS LRR

 

 

TIR disease resistance protein

 

 

Gamma thionin; Knottin

 

 

Serine/threonine PK

 

 

 

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

NBS-LRR

 

 

NB-ARC LRR

 

 

NB-ARC LRR

 

 

LRR

 

 

LRR

 

 

LRR

 

 

Peptidase A1

 

 

Myb DNA-binding protein

 

 

Thioredoxin-related

 

 

Ankyrin motif protein

 

 

NB-ARC LRR

 

 

FAR1; ZFP, SWIM-type

 

 

14-3-3 protein

 

 

NB-ARC LRR

 

 

ZFP, RING-type

 

 

Ribosomal protein L27

 

 

Myb DNA binding region

 

 

Arginine N-methyl transferase, putative

 

 

Cyclin-like F-box

 

 

Progesterone 5-beta-reductase, putative

 

 

LRR-disease resistance protein

 

 

Cyclin-like F-box

 

 

 

 

 

TTP repeat

 

 

Lipid transfer/trypsin-alpha amylase inhibitor

 

 

Heat shock protein 40 DnaJ

 

 

Calcium-binding EF-hand

 

 

LRR

 

 

GRAS TF

 

 

NB-ARC LRR

 

 

GRAS TF

 

 

Endonuclease/exonuclease/phosphatase

 

 

LRR

 

 

Legume lectin, beta domain

 

 

LRR

 

 

Ubiquitin protein binding

 

 

NBS-LRR protein

 

 

Anthranilate phosphoribosyltransferase-like

 

 

RNA binding protein

 

 

TF IIA (large subunit)

 

 

 

 

 

TF (Tb1 in Z.mays, TCP24 in At)

 

 

clp ATP synthase gamma subunit

 

 

EXOCYST subunit EXO70 family

 

 

Shatterproof 2

 

 

3-phosphoserine phosphatase

 

 

Mitochondrial substrate carrier family

____________________________________________________________________________________________________
60

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Mitochondrial carrier protein

 

 

ZFP, CCHC-type

 

 

ZFP, RING-type

 

 

ZFP, CCHC-type

 

 

ZFP, CCHC-type

 

 

Disease resistance protein, AAA ATPase

 

 

Beta-fructofuranosidase

 

 

Nodulation protein related

 

 

DEAD box RNA helicase , embryo defective 1507

 

 

 

 

 

UDP-glucuronosyl/UDP-glucosyltransferase

 

 

GT, group 1

 

 

Phospholipid/glycerol acyltransferase

 

 

Auxin influx carrier

 

 

Chaperonin, T complex protein 1

 

 

Chaperonin Cpn60/TCP-1

 

 

40S ribosomal protein S4/9

 

 

Receptor kinase protein

 

 

Double-stranded RNA binding

 

 

Cyclin-like F-box

 

 

ZFP

 

 

RNA polymerase  beta

 

 

PK family

 

 

mRNA capping enzyme, putative

 

 

LRR

 

 

NBS LRR

 

 

GRAS TF

 

 

NBS LRR

 

 

LRR (AAA ATPase)

 

 

LRR (AAA ATPase)

 

 

GRAS TF, scarecrow-like

 

 

NBS LRR

 

 

ZFP, BED-type

 

 

LRR (AAA ATPase)

 

 

LRR (AAA ATPase)

 

 

LRR (AAA ATPase)

 

 

Aldehyde dehydrogenase

 

 

PTP repeat

 

 

Lipolytic enzyme, G-D-S-L

 

 

Cyclin-like F-box

 

 

Phosphotidylinositol 4-phosphate 5-kinase

 

 

Disease resistance protein

 

 

Cyclin-like F-box

 

 

 

 

 

Cytokinin-specific binding protein

 

 

N1-acetyl spermine oxidase, putative

 

 

NBS-LRR protein

 

 

Cyclin-like F box

 

 

DEAD/DEAH box helicase

 

 

Oxysterol binding protein

 

 

 

 

 

TATA-box associated factor, RNA poly II TF

 

 

SWIB complex BAF60b containing protein

 

 

DNA binding family protein

 

 

EDM2 TF

 

 

Long chain fatty acid O-acyl transferase

AJ277858

 

Nodulin 22, helicase-related

 

 

Calmodulin-like protein

 

 

Calmodulin-like protein

 

 

Calmodulin-like protein

 

 

Calmodulin-like protein

 

 

Calmodulin-like protein

 

 

clp FtsZ-like protein, C-terminal

 

 

Sodium/hydrogen exchanger subfamily

 

 

Glycerophosphoryl diester phosphodiesterase

 

 

Protein of unknown function DUF889

 

 

Beta 1,2-xylosyltransferase

 

 

NBS LRR

 

 

NBS LRR

 

 

NBS LRR

 

 

 

 

 

ZFP, GRAS TF

 

 

Glycoside hydrolase family

 

 

Peptidase M, NB-ARC domain

 

 

NB-ARC LRR disease resistance protein

 

 

NB-ARC LRR disease resistance protein

 

 

NB-ARC LRR disease resistance protein

 

 

 

 

 

Cyclin-like F box

 

 

Cell differentiation protein Rcd1-like

 

 

RNA polymerase subunit RPB5

 

 

HMGI-HMGY DNA binding

 

 

 

 

 

Beclin 1 protein

 

 

Annexin, type IV, putative

 

 

Annexin

 

 

Annexin

 

 

Annexin

 

 

LRR  (AAA ATPase)

 

 

ZFP, CCHC type

 

 

LRR  (AAA ATPase)

 

 

LRR  (AAA ATPase)

 

 

LRR  (AAA ATPase)

 

 

TIR, disease resistance protein

 

 

NADPH-dependent FMN reductase

 

 

PK

 

 

NADPH-dependent FMN reductase

 

 

NADPH-dependent FMN reductase

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box LRR

 

 

Cyclin-like F-box LRR

____________________________________________________________________________________________________
61

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Cyclin-like F-box LRR

 

 

Cyclin-like F-box LRR

 

 

Splicing factor 3B subunit

 

 

Splicing factor 3B subunit

 

 

NBS LRR

 

 

U-box armadillo repeat containing protein

 

 

Secreted glycoprotein 3

AJ311624

 

Germin-like protein

 

 

Cupin, auxin binding protein

 

 

Rbcsk-1A

 

 

tRNA isopentenyltransferase

 

 

Adenylate isopentenyltransferase

 

 

tRNA isopentenyltransferase

AB194607

 

Adenylate isopentenyltransferase

 

 

 

 

 

Disease resistance protein AAA ATPase

 

 

Disease resistance protein AAA ATPase

 

 

Disease resistance protein AAA ATPase

 

 

Cyclin-like F-box

 

 

DNA cytosine MT

 

 

Cyclin-like F-box

 

 

Protein of unknown function DUF889

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

ZFP CCHC-type

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Protein of unknown function DUF1191

 

 

Ethylene insensitive 3

 

 

Enzyme inhibitor/pectin methylesterase

 

 

Pectinesterase

 

 

Far-red impaired response protein

 

 

cAMP response element binding

 

 

Argonaute and DICER protein PAZ

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

 

 

Cyclin-like F-box

EGL1

 

Endo beta 1,4-gluconase

 

 

Cell division cycle protein 123 homolog

 

 

ZFP C3HC4-type

 

 

KCPB-interacting PK

 

 

Transporter

 

 

GPI-anchored protein

 

 

Actin-related protein 8

 

 

WD-40 repeat

 

 

Subtilisin-like protease

 

 

WD-40 repeat

 

 

Aminoalcoholphosphotransferase

 

 

FAD linked oxidase

 

 

FAD linked oxidase

 

 

Berberine-like, FAD linked oxidase

 

 

FAD linked oxidase, berberine

 

 

Cyclin-like F box

 

 

26S proteasome regulatory subunit related

 

 

5'-adenylylsulfate reductase 2, plastid 

 

 

 

 

 

Ubiquitin-like

 

 

Heat shock protein

 

 

Pectate lyase/Amb allergen

 

 

NAD-dependent glycerol-3-phosphate dehydrogenase

 

 

Cyclin-like F-box

 

 

Translation elongation factor EF-1, alpha subunit

 

 

Translation elongation factor EF-1, alpha subunit

 

 

Small GTPase, rab2

 

 

Activator of basal transcription 1, related

 

 

ZFP, BED type

 

 

Ribosomal protein S7E

 

 

Phosphoribulokinase/uridine kinase

 

 

Lipolytic enzyme, G-D-S-L

 

 

 

 

 

Dienelactone hydrolase

 

 

Protein of unknown function DUF889

 

 

GINS complex, Psf1 component

 

 

Trigalactosityldiacylglycerol 1

 

 

Protein of unknown function DUF179

 

 

Phosphatidylinositol-4-phosphate 5-kinase 1 , putative

 

 

NAD-dependent epimerase/dehydratase

 

 

NAD-dependent epimerase/dehydratase

 

 

Homeobox,TF-like

 

 

Asp/Glu racemase

 

 

PTP repeat

 

 

Growth regulator protein

 

 

Deoxynucleoside kinase

 

 

Polyneuridinealdehyde esterase, putative

 

 

TF b3

 

 

40S  ribosomal protein S9

 

 

TF b3

 

 

40S  ribosomal protein S9

 

 

TF b3

 

 

TF b3

 

 

NMD

 

 

Eukaryotic initiation factor 1A

 

 

MADS box TF (SHP1-like)

 

 

Cellulose synthase-like

 

 

Beta galactosidase

 

 

Lipolytic enzyme G-D-S-L motif

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Pisum Genetics
2007—Volume 39
Genomic Resources
 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

U2 snRNP auxilliary factor, large subunit,

 

 

Cdc PK-like

 

 

Amino acid/polyamine transporter

 

 

CMP/dCMP deaminase, zinc-binding

 

 

Ubiquitin-protein ligase, zinc binding

 

 

DNA mismatch repair protein, mutL

 

 

ZFP (SWIM type)

 

 

Fe hydrogenase

 

 

FAR1 family putative

 

 

RING-H2 protein

List of abbreviations in Table 1
AA
amino acid
AAA
ATPases associated with diverse cellular activities
ATM
ataxia-telangiectasia butated
brct
breast cancer C terminal domain
BTB
bric-a-brac, tramtrack, broad-complex
burp
BNM2/USP/RD22/polygalacturonase domain
CCT
cytosolic chaperonin
Clp
chloroplast specific
DH
dehydrogenase
EMB
embryonic body wall muscle domain
fggy
fucolo/glucono/glycerol/xylulokinase type
gins
Go-Ichi-Ni-San or 5-1-2-3
gt
glucosyl transferase
HLH
helix-loop-helix
HMA
heavy metal associated
hmg
high mobility group
HMY
human myelin basic domain
horma
Hop1p, Rev7p and MAD2 domain
HTH
helix-turn-helix
IQ
isoleucine/glutamine domain
KH
KH domain
lrr
leucine-rich repeat
MATH
meprin and TRAF homology domain
MFS
major facilitator superfamily
mdr
multidrug resistant
MT
methyl transferase
NBS
nucleotide binding site
NFU
NiFU protein
NMD
nonsense mediated mRNA decay
nph
split pleckstrin homology domain
paz
piwi argonaute zwille domain
pdi
protein disulfide isomerase
pk
protein kinase
poz
poxvirus zinc finger
ptp
pentatricopeptide repeat
pug
peptide:N-glycanase domain
saur
small auxin up RNA
SWIB
SWI/SNF complex, including complex B domain
swirm
Swi3 and Rs88 domain
TF
transcription factor
tgf
transforming growth factor
tir
Toll/Interleukin-1 receptor domain
traf
TNF-receptor associated factor
ttp
tetratricopeptide repeat
WNK
with no lysine
WRKY
tryptophan/arginine/lysine /tyrosine domain
yggt
tyrosine/glycine/glycine/threonine
zfp
zinc finger protein
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